Kidney Infection and Kidney Stones: Causes, Symptoms, Treatment and Kidney Care

Learn about kidney infection and kidney stones, their symptoms, causes, connection, diagnosis, treatment options, warning signs, and expert kidney care at Prabhakar Bhurke Clinic. ...

October 28, 2026

Introduction

Kidney infection and kidney stones are two different conditions, but they can sometimes occur together and create serious complications.

A kidney stone is a hard deposit that develops within the urinary system, while a kidney infection is usually a bacterial infection affecting the kidney. A stone may sometimes obstruct the normal flow of urine, making it easier for infection to develop or making an existing infection more difficult to clear.

Understanding the difference between these conditions is important because their treatments are not the same. Kidney infections generally require appropriate antibiotic treatment, while kidney stones may pass naturally, require medication, or need a procedure depending on their size, location, obstruction, and other factors.

At Prabhakar Bhurke Clinic, a super specialist nephrologist provides comprehensive evaluation of kidney infections, kidney stones, kidney function, urinary abnormalities, and associated complications. When a stone requires a procedure, appropriate urology specialists can be involved in coordinated care.


What Is a Kidney Infection?

A kidney infection, medically known as pyelonephritis, is an infection involving the kidney.

It commonly develops when bacteria travel upward from the bladder through the urinary tract.

Symptoms may include:

  • Fever

  • Chills

  • Pain in the side or flank

  • Burning while urinating

  • Frequent urination

  • Urinary urgency

  • Cloudy or foul-smelling urine

  • Nausea

  • Vomiting

  • Weakness

A kidney infection requires appropriate medical assessment because untreated infection can become severe and may affect kidney function.


What Are Kidney Stones?

Kidney stones are hard deposits formed from minerals and salts in the urine.

They may remain inside the kidney without causing symptoms or move into the ureter and cause pain or urinary obstruction.

Common symptoms include:

  • Sudden flank pain

  • Back or abdominal pain

  • Pain radiating toward the groin

  • Blood in the urine

  • Nausea

  • Vomiting

  • Urinary urgency

  • Burning during urination in some cases

The severity of symptoms depends on the stone's size, location, movement, and whether it obstructs urine flow.


Can Kidney Stones Cause a Kidney Infection?

Yes, kidney stones can contribute to urinary infections, particularly when they obstruct urine flow.

A stone can create conditions in which urine does not drain normally. If bacteria are present, infection can become more difficult to clear.

Certain infection-associated stones, particularly struvite stones, can also develop in connection with specific urinary bacteria.

However, not every kidney stone is caused by infection.

Most kidney stones are related to factors such as urine concentration, mineral composition, diet, metabolic conditions, genetics, or other urinary risk factors.


Kidney Infection vs Kidney Stones

Although some symptoms overlap, the two conditions have important differences.

Kidney Infection

More commonly associated with:

  • Fever

  • Chills

  • Burning urination

  • Frequent urination

  • Cloudy urine

  • Nausea or vomiting

  • Flank pain

Kidney Stones

More commonly associated with:

  • Severe or wave-like flank pain

  • Pain radiating toward the groin

  • Blood in the urine

  • Nausea or vomiting

  • Urinary symptoms when the stone reaches the lower urinary tract

A person can have both conditions at the same time, which requires prompt medical assessment.


Symptoms of Kidney Infection and Kidney Stones Together

When a kidney stone and infection occur together, symptoms may include:

  • Severe flank pain

  • Fever or chills

  • Burning during urination

  • Blood in the urine

  • Nausea and vomiting

  • Cloudy or foul-smelling urine

  • Reduced urine output

  • Feeling very weak or unwell

The combination of infection and urinary obstruction can become a medical emergency.


Why an Infected Obstructed Kidney Is an Emergency

If a stone blocks urine drainage while an infection is present, bacteria and infected urine can become trapped behind the obstruction.

This can lead to a rapidly worsening infection and potentially sepsis, a life-threatening response to infection.

Warning signs include:

  • High fever

  • Severe chills

  • Rapid worsening of symptoms

  • Severe flank pain

  • Vomiting

  • Confusion

  • Very low urine output

  • Severe weakness

  • Low blood pressure or fainting

Patients with suspected infected urinary obstruction require urgent medical evaluation.

Antibiotics alone may not be enough when urine is significantly obstructed. Urgent drainage of the urinary system may be required, typically through a ureteral stent or nephrostomy, followed by definitive stone treatment once the infection is controlled.


How Are Kidney Infection and Kidney Stones Diagnosed?

At Prabhakar Bhurke Clinic, evaluation may involve several investigations.

Medical History and Examination

The doctor may assess:

  • Location and severity of pain

  • Fever and chills

  • Urinary symptoms

  • Previous kidney stones

  • Previous urinary infections

  • Medical history

  • Current medications

  • Blood pressure

  • Hydration status


Urine Tests

Urine testing may include:

  • Routine urinalysis

  • Urine microscopy

  • Urine culture

  • Protein or albumin assessment when indicated

A urine culture can help identify bacteria and guide antibiotic selection.


Blood Tests

Investigations may include:

  • Serum creatinine

  • eGFR

  • Blood urea nitrogen

  • Electrolytes

  • Complete blood count

  • Blood glucose when appropriate

These tests help assess infection severity and kidney function.


Imaging

Imaging may include:

  • Kidney ultrasound

  • Non-contrast CT scan for suspected stones

  • Other imaging when clinically indicated

Imaging can help identify:

  • Stone size

  • Stone location

  • Hydronephrosis

  • Urinary obstruction

  • Kidney swelling

  • Structural abnormalities


Treatment for Kidney Infection

Treatment depends on the severity of infection and the patient's overall condition.

Antibiotics

Bacterial kidney infections generally require appropriate antibiotics.

The choice of antibiotic depends on factors such as:

  • Suspected bacteria

  • Urine culture results

  • Infection severity

  • Kidney function

  • Previous antibiotic exposure

  • Patient-specific factors

Antibiotics should be taken exactly as prescribed.


Fluids

Fluid intake should be individualized.

A person with a straightforward infection may be advised to maintain appropriate hydration, but patients with advanced kidney disease, heart failure, obstruction, or fluid restrictions should not force excessive fluids without medical advice.


Treatment for Kidney Stones

Treatment depends on:

  • Stone size

  • Stone location

  • Degree of obstruction

  • Symptoms

  • Infection

  • Kidney function

  • Stone composition when known

Small Stones

Some small stones can pass naturally with appropriate medical management.


Medicines

Selected patients may receive medicines to control pain or facilitate passage of certain ureteral stones.

The choice depends on the stone's location and the patient's condition.


ESWL

Extracorporeal Shock Wave Lithotripsy (ESWL) uses shock waves to fragment selected stones into smaller pieces.

It may be appropriate for certain stones depending on their size, location, and composition.


Ureteroscopy and Laser Lithotripsy

A urologist can use a ureteroscope to reach the stone and fragment it with a laser.

This approach may be considered for selected ureteral or kidney stones.


RIRS

Retrograde Intrarenal Surgery (RIRS) uses a flexible ureteroscope to access stones within the kidney and fragment them, commonly using laser energy.


PCNL

Percutaneous Nephrolithotomy (PCNL) is a procedure used for larger or complex kidney stone burdens.

It involves accessing the kidney through a small tract through the skin and removing or fragmenting the stone.

A urologist generally performs these stone-removal procedures.


What Happens When a Kidney Stone Causes Infection?

When there is infection plus significant urinary obstruction, the immediate priority is usually to control the infection and restore urine drainage.

The treatment pathway may involve:

  1. Urgent medical assessment

  2. Blood and urine cultures

  3. Appropriate antibiotics

  4. Emergency urinary drainage when necessary

  5. Stabilization and treatment of the infection

  6. Definitive stone removal after the acute infection has been controlled

Definitive stone treatment is generally delayed until the infection is adequately managed when urgent drainage is required.


Can Kidney Stones Be Prevented?

After a stone episode, prevention depends on the type of stone and its underlying cause.

Helpful measures may include:

  • Drinking an appropriate amount of fluid

  • Reducing excessive salt intake

  • Maintaining a balanced diet

  • Avoiding excessive intake of certain stone-forming foods when medically indicated

  • Maintaining a healthy body weight

  • Completing metabolic evaluation when stones are recurrent

  • Following specialist dietary recommendations

Fluid recommendations should be individualized for patients with kidney, heart, or other medical conditions.


Can Kidney Infection Be Prevented?

Some urinary infections can be reduced by:

  • Maintaining appropriate hydration

  • Not delaying urination unnecessarily

  • Managing underlying urinary tract abnormalities

  • Treating urinary infections promptly

  • Following medical advice for recurrent UTIs

  • Addressing urinary obstruction or stones when indicated

People with recurrent infections may require additional evaluation to identify an underlying cause.


When Should You See a Nephrologist?

Consult a super specialist nephrologist if you have:

  • Recurrent kidney infections

  • Recurrent kidney stones

  • Blood in the urine

  • Protein in the urine

  • High creatinine

  • Reduced eGFR

  • Hydronephrosis

  • High blood pressure

  • Diabetes with abnormal kidney tests

  • Persistent flank pain

  • Repeated urinary abnormalities

A nephrologist can assess kidney function and associated kidney disease and coordinate care with a urologist when stone procedures or treatment of urinary obstruction are required.


Why Choose Prabhakar Bhurke Clinic?

Patients choose Prabhakar Bhurke Clinic for:

  • Consultation with a super specialist nephrologist

  • Comprehensive kidney function assessment

  • Evaluation of kidney infections and urinary abnormalities

  • Kidney stone evaluation and prevention guidance

  • Assessment of hydronephrosis and urinary obstruction

  • Chronic kidney disease management

  • Blood pressure and diabetes-related kidney care

  • Dialysis planning when medically required

  • Kidney transplant evaluation and guidance

  • Coordination with appropriate urology specialists for stone procedures

  • Personalized, evidence-based kidney care

  • Long-term kidney health monitoring

The focus is on identifying the underlying cause and providing an individualized treatment strategy.


Frequently Asked Questions

Can kidney stones cause kidney infections?

Yes. Stones can sometimes obstruct urine flow and contribute to infection. Certain infection-associated stones can also develop in the presence of specific urinary bacteria.

Can a kidney infection cause kidney stones?

A kidney infection does not cause every type of kidney stone. However, certain bacteria can contribute to the formation of infection-related struvite stones.

Is kidney infection with a stone dangerous?

Yes. An infected, obstructed urinary system can become a medical emergency and may lead to sepsis. Urgent medical assessment is required.

Can antibiotics remove kidney stones?

No. Antibiotics treat bacterial infection but do not remove ordinary kidney stones. A stone causing obstruction may require separate treatment.

Should I drink lots of water if I have kidney stones and an infection?

Do not force excessive amounts of water without medical advice. If urine flow is obstructed, excessive fluid intake can be inappropriate. Fluid recommendations should be individualized.

Which doctor treats kidney stones and kidney infections?

A nephrologist evaluates kidney function and kidney disease. A urologist may perform procedures to remove stones or relieve urinary obstruction. Some patients benefit from coordinated care between both specialists.


Conclusion

Kidney infection and kidney stones are separate conditions, but they can occur together and may become particularly serious when a stone blocks urine flow during an infection. Recognizing symptoms such as flank pain, fever, chills, blood in the urine, burning urination, nausea, or reduced urine output is important.

An infected urinary obstruction requires urgent medical attention. Antibiotics may be needed for infection, while obstructing stones may require drainage followed by definitive stone treatment once the infection has been controlled.

At Prabhakar Bhurke Clinic, a super specialist nephrologist provides comprehensive kidney evaluation, kidney function monitoring, infection assessment, kidney stone evaluation, chronic kidney disease management, and coordinated care with appropriate urology specialists when procedures are required.


Book an Appointment Today

If you are experiencing kidney pain, fever, burning urination, blood in the urine, recurrent kidney stones, recurrent kidney infections, hydronephrosis, high creatinine, reduced eGFR, or urinary obstruction symptoms, schedule a consultation at Prabhakar Bhurke Clinic. A super specialist nephrologist can evaluate your condition, assess kidney function, identify risk factors, and guide you toward appropriate treatment.


Medical Disclaimer

This article is intended for general educational purposes only and does not replace professional medical advice, diagnosis, or treatment. Kidney infections and obstructing kidney stones can sometimes become serious rapidly. Do not self-medicate with antibiotics or rely solely on home remedies. Seek urgent medical attention for severe flank pain with fever or chills, persistent vomiting, difficulty passing urine, very low urine output, confusion, fainting, or rapidly worsening symptoms.

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Dr. Sandip Bhurke

Nephrologist Super-Specialist

Consultation Fees: 1800
Follow-Up Fees : 1000

Dr. Kakalee K Saha

Diabetologist and Obesity Specialist

Consultation Fees: 2000
Follow-Up Fees : 1000

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